sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database
نویسندگان
چکیده
منابع مشابه
A Web-based design center for vector-based siRNA and siRNA cassette
SUMMARY To facilitate the designing process for vector-based siRNA and siRNA cassette, a tool set has been developed consisting of a siRNA target finder, a siRNA construct builder and a siRNA sequence scrambler. The siRNA target finder is used to identify candidate siRNA target sites. The program automates homology filtering, minimizes non-specific cross-reaction, filters target sites based on ...
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Small interfering RNAs (siRNAs) have become a standard tool in functional genomics. Once incorporated into the RNA-induced silencing complex (RISC), siRNAs mediate the specific recognition of corresponding target mRNAs and their cleavage. However, only a small fraction of randomly chosen siRNA sequences is able to induce efficient gene silencing. In common laboratory practice, successful RNA in...
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Given an mRNA sequence as input, the OligoWalk web server generates a list of small interfering RNA (siRNA) candidate sequences, ranked by the probability of being efficient siRNA (silencing efficacy greater than 70%). To accomplish this, the server predicts the free energy changes of the hybridization of an siRNA to a target mRNA, considering both siRNA and mRNA self-structure. The free energy...
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بیماری‌های عفونی ناشی از میکروارگانیسم‌ها هم‌چنان به‌عنوان علل عمده مرگ در سراسر جهان مطرح بوده و افزایش تعداد سویه‌های مقاوم آن‌ها باعث نگرانی زیادی شده است. از زمان کشف خاموشی ژن توسط RNA (RNAi) انقلابی در زمینه کاربرد درمانی آن به‌راه افتاده است. استفاده از RNA مداخله‌گر پتانسیل درمانی بسیاری برای درمان یا پیش‌گیری از بیماری‌ها دارد. این RNA ها نقش‌های حیاتى در تنظیم رونویسى و پس از رونویسى،...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2007
ISSN: 1471-2105
DOI: 10.1186/1471-2105-8-178